The use of Hardy-Weinberg Equilibrium in clonal plant systems

Traditionally population genetics precludes the use of the same genetic individual more than once in Hardy-Weinberg (HW) based calculations due to the model\u27s explicit assumptions. However, when applied to clonal plant populations this can be difficult to do, and in some circumstances, it may be ecologically informative to use the ramet as the data unit. In fact, ecologists have varied the definition of the individual from a strict adherence to a single data point per genotype to a more inclusive approach of one data point per ramet. With the advent of molecular tools, the list of facultatively clonal plants and the recognition of their ecological relevance grows. There is an important risk of misinterpretation when HW calculations are applied to a clonal plant not recognized as clonal, as well as when the definition of the individual for those calculations is not clearly stated in a known clonal species. Focusing on heterozygosity values, we investigate cases that demonstrate the extreme range of potential modeling outcomes and describe the different contexts where a particular definition could better meet ecological modeling goals. We emphasize that the HW model can be ecologically relevant when applied to clonal plants, but caution is necessary in how it is used, reported, and interpreted. We propose that in known clonal plants, both genotype (GHet) and ramet (RHet) based calculations are reported to define the full range of potential values and better facilitate cross-study comparisons

Environmental issues in russia

This review examines the literature available on the state of the environment and environmental protection in the Russian Federation. As the largest country on Earth, rich in natural resources and biodiversity, Russia\u27s problems and policies have global consequences. Environmental quality and management are influenced by the legacy of Soviet economic planning and authoritarian governance, as well as by Russia\u27s post-Soviet economic recession and current strategies of economic development. Russia achieved a reduction in some pollutants owing to the collapse of industrial production in the 1990s, but many environmental indicators suggest growing degradation. Russia has signed on to a number of international environmental agreements, but its record on implementation is mixed, and it discourages environmental activism. Scholarship on the Russian environment is a limited, but growing, field, constrained by challenges of data availability, yet it offers great potential for testing scientific and social scientific hypotheses. ©2008 by Annual Reviews

Genetic Population Structure and Accuracy of Morphological Assessment in Alosa aestivalis (Blueback Herring) and A. pseudoharengus (Alewife)

Alosa aestivalis and A. pseudoharengus are herring congeners that are important forage species for piscivorous fish and birds. We measured population structure metrics for these species using microsatellite markers. The Southern Gulf of Maine study area allowed the assessment of these species at an inter- and intra-watershed level. We found no detectable population structure within or among watershed for either species which agrees with other recent research. Our results support regional-scale (e.g., Gulf of Maine) plans for management for A. aestivalis and A. pseudoharengus. We found that 5.4% of our samples were hybrids. Our study adds to a growing body of evidence that hybridization and introgression should be management concerns for these species, and precautions should be taken to preserve species barriers. An error rate of morphological identification was calculated by comparing morphological identifications against genetic classifications. We found an overall identification error rate of 16%, which differed significantly from zero (P = 0.008). Managers should also take note of the uncertainty in morphological identifications and adjust stock models and policies accordingly

Sexual reproduction is more prevalent in continental landscapes in the expanding arctic shrub, Salix glauca

The recent expansion of arctic deciduous shrubs has been well documented across a range of habitats, but the phenomenon is not universal. Their spread is often associated with increases in temperature and other abiotic factors, while variation in habitat moisture and herbivory can mediate the location and rate of this rise in abundance. Much less is known about the mode of increase of arctic shrubs. For one such shrub, Salix glauca, we used microsatellite markers to assess the prevalence of clonal growth (i.e. vegetative spread) and sexual reproduction (i.e. recruitment from seed) at sites with maritime and continental climates and differing in the density of large herbivores. We sampled individuals in plots reflecting the spatial scale of expansion in locations where S. glauca recently increased in abundance. The 400 samples collected across the four sites comprised 310 genotypes. Though evidence of sexual recruitment was common across all sites, coastal sites contained both more and larger clonal genotypes. While we expected soil conditions would be influential, the factors that best predicted the likelihood of clonality, genet size and vascular plant cover, suggest the light environment is of primary importance. Furthermore, in spite of the large distances between sites, there was no suggestion of genetic differentiation into distinct populations. These results indicate that differences in climate and herbivory can influence not only where and how extensively deciduous shrubs spread, but how they are likely to do so. We suggest future research integrating how mode of increase is associated with the rate of spread will advance projections of change in arctic ecosystems

Incidence, size and spatial structure of clones in second-growth stands of coast redwood, Sequoia sempervirens (Cupressaceae)

The ecology and evolutionary potential of coast redwood (Sequoia sempervirens) is significantly influenced by the important role clonal spread plays in its reproduction and site persistence. In nine second-growth stands, amplified fragment length polymorphisms (AFLPs) were used to identify redwood clonal architecture. Clones (multistem genets) dominated sites by representing an average of 70% of stems measured, ranging in size from two to 20 stems. As a result, a relatively small number of genets can monopolize a disproportionate amount of site resources, are more likely to persist over time, and have greater on-site genetic representation. Clones were not limited to fairy-ring structures, but consisted of a wide range of shapes including concentric rings, ring chains, disjunct, and linear structures. Between-ramet distances of up to 40 m were measured, indicating that clonal reproduction is not limited to basal stump resprouting. Clonal structure in second-growth stands was similar to earlier reports from old growth, emphasizing the importance of site persistence and long-term, gradual site development. Smaller ramet numbers per genet in old growth is probably due to local within-genet self thinning. Management and conservation of redwoods will benefit from a better understanding of the dynamics and structure of clonal spread in these forests

Responses of stomatal features and photosynthesis to porewater N enrichment and elevated atmospheric CO2 in Phragmites australis, the common reed

PREMISE Biological invasions increasingly threaten native biodiversity and ecosystem services. One notable example is the common reed, Phragmites australis, which aggressively invades North American salt marshes. Elevated atmospheric CO2 and nitrogen pollution enhance its growth and facilitate invasion because P. australis responds more strongly to these enrichments than do native species. We investigated how modifications to stomatal features contribute to strong photosynthetic responses to CO2 and nitrogen enrichment in P. australis by evaluating stomatal shifts under experimental conditions and relating them to maximal stomatal conductance (g(wmax)) and photosynthetic rates.METHODS Plants were grown in situ in open-top chambers under ambient and elevated atmospheric CO2 (eCO(2)) and porewater nitrogen (N-enr) in a Chesapeake Bay tidal marsh. We measured light-saturated carbon assimilation rates (A(sat)) and stomatal characteristics, from which we calculated g(wmax) and determined whether CO2 and N-enr altered the relationship between g(wmax) and A(sat).RESULTS eCO(2) and N-enr enhanced both g(wmax) and A(sat), but to differing degrees; g(wmax) was more strongly influenced by N-enr through increases in stomatal density while A(sat) was more strongly stimulated by eCO(2). There was a positive relationship between g(wmax) and A(sat) that was not modified by eCO(2) or N-enr, individually or in combination.CONCLUSIONS Changes in stomatal features co-occur with previously described responses of P. australis to eCO(2) and N-enr. Complementary responses of stomatal length and density to these global change factors may facilitate greater stomatal conductance and carbon gain, contributing to the invasiveness of the introduced lineage

Isolation of nine microsatellite loci in Dolichogenidea homoeosomae (Hymenoptera) a parasitoid of the sunflower moth Homoeosoma electellum (Lepidoptera)

Nine microsatellite loci were isolated from the insect Dolichogenidea homoeosomae (Hymenoptera: Braconidae), an important parasitoid of the sunflower moth Homosoeosoma electellum (Lepidoptera: Pyralidae), and assayed for polymorphism. All nine loci were polymorphic within the five populations tested, with two to 14 alleles per locus. Expected and observed heterozygosities ranged from 0.39 to 0.90 and 0.25 to 0.72 respectively. These are the first microsatellite primers developed for D. homeosomae and will be useful for studies of population dynamics and connectivity. © 2006 Blackwell Publishing Ltd

Clonal diversity in an expanding community of Arctic Salix spp. and a model for recruitment modes of arctic plants

Rapid climate change in arctic environments is leading to a widespread expansion in woody deciduous shrub populations. However, little is known about the reproductive, dispersal, and establishment mechanisms associated with shrub expansion. It is assumed that harsh environmental conditions impose limitations on plant sexual reproduction in the Arctic, such that population survival and expansion is predominately a function of clonal recruitment. We present contrary evidence from microsatellite genetic data suggesting the prevalence of recruitment by seed. Further, we present a conceptual model describing modes of recruitment in relation to the abiotic environment. Climate change may be alleviating abiotic stress so that resources are available for more frequent recruitment by seed. Such changes have widespread implications for ecosystem structure and functioning, including species composition, wildlife habitat, biogeochemical cycling, and surface energy balance. © 2010 Regents of the University of Colorado

Adjusting to global change through clonal growth and epigenetic variation

The earth is experiencing major changes in global and regional climates and changes are predicted to accelerate in the future. Many species will be under considerable pressure to evolve, to migrate, or be faced with extinction. Clonal plants would appear to be at a particular disadvantage due to their limited mobility and limited capacity for adaptation. However, they have outlived previous environmental shifts and clonal species have persisted for millenia. Clonal spread offers unique ecological advantages, such as resource sharing, risk sharing, and economies of scale among ramets within genotypes. We suggest that ecological attributes of clonal plants, in tandem with variation in gene regulation through epigenetic mechanisms that facilitate and optimize phenotype variation in response to environmental change may permit them to be well suited to projected conditions